如何从TCGA数据库中,分析染色体拷贝数的变异(如缺失)情况?

我在文献中看到有人根据TCGA数据分析了肾细胞癌的测序信息,得出了3号染色体拷贝数下降的结果。请问这种结果是怎么得出的呢?谢谢老师。


附文献中的原文:doi:10.1038/modpathol.2017.72 

An additional 143 were found to have a 3p arm copy number loss without detection of VHL mutation or deep deletion. Another 20 were found to have decreased copy number for the entire chromosome 3, interpreted as monosomy 3.
 

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