3 title:Identification of invasion‑metastasis‑associated microRNAs in hepatocellular carcinoma based on bioinformatic analysis and experimental validation.

 Screening for DE‑miRNAs Data were normalized using the normalizeBetweenArray function from R package ‘LIMMA’ from the bioconductor project [13]. Data before and after normalization were shown in Fig. 1a, b, respectively. The miRNA differential expression analysis was conducted using the limma software package in the Bioconductor package (http://www. bioco nduct or.org/). The related codes were put into R,and the DE-miRNAs in HCC tumor samples with vascular invasion compared to HCC tumor samples without vascular invasion were analyzed through the limma package. P-value < 0.05 and |fold change (FC)| > 2 were set as the thresholds for identifying DE-miRNAs.

miRNA数据的预处理,归一化,和上下调差异基因的筛选,具体怎么操作呢?谢谢各位指点

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祝让飞 - 生物信息工程师

文章说的很明白先使用R包LIMMA的normalizeBetweenArray函数进行数据标准化,然后使用limma进行差异筛选,阈值为p<0.05和lfc>2

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