收藏|已公布的三代全长转录组数据

目前已发表的三代全长转录组数据。

目前以Pacbio为检索词,在NCBI中共检索到下面物种具有全长转录组数据,因而依靠这些数据我么可以干这些事:

1.某个特定基因全长序列的获得,不用再用RACE实验获取了,简单省事.

2.可变剪接的获得.比起二代将会更加直接.

3.基因模型优化.不用再害怕这个基因预测不准了,直截了当.

表格如下


更新日期ScientificName中文名字BioProject
2017/5/24Pyropia haitanensis坛紫菜PRJNA386620
2015/12/1Homo sapiens智人PRJNA290542
2013/9/30Human immunodeficienc人免疫缺PRJNA217811
2012/8/1HIV-1 M:B_89.6SRX159797SRR528849
2012/8/1HIV-1 M:B_89.6SRX159796SRR528848
2012/8/1HIV-1 M:B_89.6SRX159796SRR528843
2016/11/23Arabidopsis thaliana拟南芥PRJNA323955
2012/8/1HIV-1 M:B_89.6SRX159795SRR528841
2012/8/1HIV-1 M:B_89.6SRX159794SRR528840
2012/8/1HIV-1 M:B_89.6SRX159796SRR528847
2012/8/1HIV-1 M:B_89.6SRX159796SRR528846
2012/8/1HIV-1 M:B_89.6SRX159796SRR528845
2012/8/1HIV-1 M:B_89.6SRX159796SRR528844
2017/2/21Sus scrofa野猪PRJNA351265
2015/7/22Gallus gallus原鸡PRJNA239269
2016/4/13Homo sapiens智人PRJEB11818
2016/1/27Homo sapiens智人PRJNA309663
2016/6/5Homo sapiens智人PRJEB13749
2014/12/11Triticum aestivum面包小麦PRJNA222535
2016/5/4Suid herpesvirus 1 strain猪疱疹病PRJEB12867
2012/8/1HIV-1 M:B_89.6SRX159797SRR528850
2012/8/1HIV-1 M:B_89.6SRX159797SRR528851
2012/8/1HIV-1 M:B_89.6SRX159797SRR528852
2013/8/1HIV-1 M:B_89.6SRX159784SRR528799
2012/8/1HIV-1 M:B_89.6SRX159784SRR528798
2016/12/23Plicaturopsis crispa皱褶革菌PRJNA355565
2015/2/13Human immunodeficienc人免疫缺PRJNA274640
2013/8/1HIV-1 M:B_89.6SRX159784SRR528797
2012/8/1HIV-1 M:B_89.6SRX159784SRR528796
2016/11/25Homo sapiens智人PRJNA290142
2017/1/31Dipteryx oleifera香豆油茶PRJNA330734
2015/11/24Influenza A virus (A/Ho甲型流感PRJNA183620
2017/7/1Homo sapiens智人PRJNA352714
2015/5/29Homo sapiens智人PRJNA253335
2017/1/13Homo sapiens智人PRJNA359986
2016/11/30Suid herpesvirus 1 strain猪疱疹病PRJEB17709
2016/7/19Zea mays玉米PRJNA10769
2012/8/1HIV-1 M:B_89.6SRX159795SRR528842
2017/1/9Human immunodeficienc人免疫缺PRJNA356756
2014/4/1Mus musculus小家鼠PRJNA239914
2017/7/11Aedes aegypti埃及伊蚊PRJNA393466
2016/12/20Gadus morhua大西洋鳕PRJEB18628
2012/8/1HIV-1 M:B_89.6SRX159791SRR528828
2016/5/1Sorghum bicolor高粱PRJEB13026
2015/7/20Beta vulgaris subsp. vulg甜菜PRJNA41497
2012/8/1HIV-1 M:B_89.6SRX159790SRR528820
2012/8/1HIV-1 M:B_89.6SRX159790SRR528823
2012/8/1HIV-1 M:B_89.6SRX159790SRR528822
2012/8/1HIV-1 M:B_89.6SRX159791SRR528825
2012/8/1HIV-1 M:B_89.6SRX159790SRR528824
2012/8/1HIV-1 M:B_89.6SRX159791SRR528827
2012/8/1HIV-1 M:B_89.6SRX159791SRR528826
2016/10/13Homo sapiens智人PRJNA298944
2015/10/28Oryza sativa Japonica G粳稻PRJEB8082
2015/1/29Salmonella enterica subs沙门氏菌PRJEB6002
2014/8/4Notothenia coriiceps革首南极PRJNA66471
2017/1/9Homo sapiens智人PRJNA321560
ReleaseDateScientificName中文名字BioProject
2015/3/10Homo sapiens智人PRJNA277461
2015/9/30Zaire ebolavirus扎伊尔埃PRJNA264428
2017/2/17Saccharum hybrid cultiv甘蔗杂交PRJNA356226
2017/4/14Arabidopsis thaliana拟南芥PRJNA382842
2012/8/1HIV-1 M:B_89.6SRX159794SRR528838
2012/8/1HIV-1 M:B_89.6SRX159794SRR528839
2012/8/1HIV-1 M:B_89.6SRX159793SRR528832
2012/8/1HIV-1 M:B_89.6SRX159793SRR528833
2012/8/1HIV-1 M:B_89.6SRX159792SRR528830
2012/8/1HIV-1 M:B_89.6SRX159793SRR528831
2012/8/1HIV-1 M:B_89.6SRX159793SRR528836
2012/8/1HIV-1 M:B_89.6SRX159794SRR528837
2012/8/1HIV-1 M:B_89.6SRX159793SRR528834
2012/8/1HIV-1 M:B_89.6SRX159793SRR528835
2012/8/1HIV-1 M:B_89.6SRX159774SRR530879
2012/6/26Zea mays玉米PRJNA168080
2015/8/28Influenza A virus甲型流感PRJNA253584
2016/8/14Saccharum hybrid cultiv甘蔗杂交PRJNA291816
2015/12/17Triticum aestivum面包小麦PRJNA285723
2017/4/4Nepenthes x hookeriana双色虎克PRJNA299862
2012/8/1HIV-1 M:B_89.6SRX159787SRR528809
2012/8/1HIV-1 M:B_89.6SRX159787SRR528808
2012/8/1HIV-1 M:B_89.6SRX159787SRR528807
2012/8/1HIV-1 M:B_89.6SRX159787SRR528806
2012/8/1HIV-1 M:B_89.6SRX159786SRR528805
2012/8/1HIV-1 M:B_89.6SRX159786SRR528804
2012/8/1HIV-1 M:B_89.6SRX159786SRR528803
2012/8/1HIV-1 M:B_89.6SRX159786SRR528802
2012/8/1HIV-1 M:B_89.6SRX159785SRR528801
2012/8/1HIV-1 M:B_89.6SRX159785SRR528800
2017/1/3Mus musculus小家鼠PRJNA306027
2016/7/26Chenopodium quinoa藜麦PRJNA306026
2016/7/8Homo sapiens智人PRJNA315527
2015/8/13Mus musculus小家鼠PRJEB9114
2016/11/14Schizosaccharomyces p粟酒裂殖PRJNA317011
2016/3/25Schizosaccharomyces p粟酒裂殖PRJNA289903
2016/10/18Triticum aestivum面包小麦PRJEB15048
2015/10/28Plicaturopsis crispa皱褶革菌PRJNA261247
2012/8/1HIV-1 M:B_89.6SRX159787SRR528810
2012/8/1HIV-1 M:B_89.6SRX159788SRR528811
2012/8/1HIV-1 M:B_89.6SRX159788SRR528812
2012/8/1HIV-1 M:B_89.6SRX159788SRR528813
2012/8/1HIV-1 M:B_89.6SRX159788SRR528814
2012/8/1HIV-1 M:B_89.6SRX159789SRR528815
2012/8/1HIV-1 M:B_89.6SRX159789SRR528816
2012/8/1HIV-1 M:B_89.6SRX159789SRR528817
2012/8/1HIV-1 M:B_89.6SRX159789SRR528818
2012/8/1HIV-1 M:B_89.6SRX159790SRR528819
2012/8/1HIV-1 M:B_89.6SRX159783SRR528795
2012/8/1HIV-1 M:B_89.6SRX159783SRR528794
2012/8/1HIV-1 M:B_89.6SRX159782SRR528793
2012/8/1HIV-1 M:B_89.6SRX159782SRR528792
2012/8/1HIV-1 M:B_89.6SRX159781SRR528791
2012/8/1HIV-1 M:B_89.6SRX159781SRR528790
2015/2/26Mus musculus小家鼠PRJNA262902
2014/6/21Homo sapiens智人PRJNA236780
2015/5/11Homo sapiens智人PRJNA267017
2017/4/13Hordeum vulgare大麦PRJEB14446
2016/12/25Hepatitis C virus丙型肝炎PRJNA358253
2016/6/2Gallus gallus原鸡PRJEB13246
2017/6/6Phyllostachys edulis毛竹PRJNA354950
2017/4/12Human alphaherpesvirus人类疱疹PRJNA381128
2016/6/13Triticum aestivum面包小麦PRJNA306427
2016/6/2Gallus gallus原鸡PRJEB13248
2012/8/1HIV-1 M:B_89.6SRX159776SRR530880
2012/8/1HIV-1 M:B_89.6SRX159775SRR530881
2012/8/1HIV-1 M:B_89.6SRX159779SRR528780
2012/8/1HIV-1 M:B_89.6SRX159779SRR528781
2017/3/1Archilochus colubris拟南芥PRJNA369257
2012/8/1HIV-1 M:B_89.6SRX159779SRR528783
2012/8/1HIV-1 M:B_89.6SRX159780SRR528784
2012/8/1HIV-1 M:B_89.6SRX159780SRR528785
2012/8/1HIV-1 M:B_89.6SRX159781SRR528786
2012/8/1HIV-1 M:B_89.6SRX159781SRR528787
2012/8/1HIV-1 M:B_89.6SRX159781SRR528788
2012/8/1HIV-1 M:B_89.6SRX159781SRR528789
2015/9/2Homo sapiens智人PRJNA268670
2017/1/23Mus musculus小家鼠PRJNA362590
2014/5/30Propithecus coquereli智人PRJNA239248
2012/8/1HIV-1 M:B_89.6SRX159792SRR528829
2015/10/5Salvia miltiorrhiza丹参PRJNA266375
2012/8/1HIV-1 M:B_89.6SRX159779SRR528779
2012/8/1HIV-1 M:B_89.6SRX159779SRR528778
2012/8/1HIV-1 M:B_89.6SRX159778SRR528775
2012/8/1HIV-1 M:B_89.6SRX159778SRR528774
2012/8/1HIV-1 M:B_89.6SRX159778SRR528777
2012/8/1HIV-1 M:B_89.6SRX159778SRR528776
2012/8/1HIV-1 M:B_89.6SRX159779SRR528782
2012/8/1HIV-1 M:B_89.6SRX159777SRR528773
2012/8/1HIV-1 M:B_89.6SRX159777SRR528772
2017/3/10Rosellinia necatrix白纹羽病PRJNA358652
2013/8/12Homo sapiens智人PRJEB3969
2016/8/29Lagenidium giganteum大链壶菌PRJNA256125
2017/3/10Fragaria vesca野草莓PRJNA320931
2012/5/6Homo sapiens智人PRJNA85103
2015/10/28Sorghum bicolor高粱PRJEB10584
2016/5/19Homo sapiens智人PRJNA301527
2017/7/3Bos taurusPRJNA386670
2017/6/21Panax ginseng人参PRJNA391203
2017/3/7Amborella trichopoda无油樟PRJNA374048
2012/8/1HIV-1 M:B_89.6SRX159790SRR528821
2017/4/18Human alphaherpesvirus人类疱疹PRJNA382882
2017/3/21Gossypium barbadense海岛棉PRJNA359724
2014/11/28Homo sapiens智人PRJNA260556
2017/4/29Rattus norvegicus褐家鼠PRJNA320100
2016/7/17Pinus lambertiana糖松PRJNA174450

  • 发表于 2017-07-26 09:27
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  • 分类:转录组学

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